_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-24
 Query name: gi|929071548|ref|XP_014045395.1| PREDICTED: 15 kDa selenoprotein-like [Salmo salar]
 Query range: 1-157  (total 157)

 Target: /data/www-rg/seblastian_results/323931089/tempfiles/temptarget.fasta
 Chromosome: CM007962.1:subseq_31024651,109092_ Strand: +
 Positions:
 -Exon 1  47020        47067
 -Exon 2  50012        50179
 -Exon 3  57982        58045
 -Exon 4  58700        58749
 -Exon 5  58970        59110

 Redox box: no

Query   MSGEVYILWLLSLIQT <---Intron---> LSAYGADLSSEACRELGFSSNLLCSSCDLLGEFSLGQIQPVCRQCCQQEAQMESRK <---Intron-
        |||||||||||||||| <   2944bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   7802bp 
Target  MSGEVYILWLLSLIQT                LSAYGADLSSEACRELGFSSNLLCSSCDLLGEFSLGQIQPVCRQCCQQEAQMESRK            
        atgggtattcctcaca                ctgtgggcttggtagcgttaacctattgccggtacgcaccgtacttccggcagtaa            
        tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtgatactggaggaaacatacga            
        gggggttggtttcaag                tgctaccgcagacgggccccccgccctcggagccgcgcgtctagccgggcgggcgg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGADPILKLLDDNGNIAEELSILK
          > |||||||||||||||||||||| <   654bp    > |||||||||||||||| <   220bp    > ||||||||||||||||||||||||||
Target      LYPGAILEVCGUKLGRFPQVQA                FVRSDKPKMFKGLQIK                YVRGADPILKLLDDNGNIAEELSILK
            ctcggacggtgtatgatccgcg                tgatgacaatagccaa                tgagggcacaccggagaagggcaaca
            tacgcttatgggatggtcata                cttgcaacattagtata                atggcacttattaaagatcaatgtta
            cctgccgagtaaggggctaca                ttcgtcggggcgttatg                tgacactaagggctcgcctaaccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLEVYNTDS
        |||||||||||||||||||||
Target  WNTDSVEEFLSEKLEVYNTDS
        taagagggtcagatggtaagt
        gacagtaattgaatataacac
        gcgtcggacacgggaatttta
                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 429 ; UGA-SECIS: 648

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007962.1:subseq_31024651,109092_ Strand = + Positions = 59540 - 59612
 Found by:  Infernal (score=40.0) Covels (score=41.55)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -23.34

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((((--....{[[((({(((((([(.....-.........)]))))))})))]]}..--...))))))))))
 target  GAGGCACACA--UUAAUGAAGGCCUCACAGUAAACC-ACAGUUUGGGAUGUGAGACCUGAUGG--CCCUGUGUGUUUC
                         ****           ^^^                       ****